Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus.
ABSTRACT. - Background: Diaporthe caulivora is a fungal pathogen causing stem canker in soybean worldwide. The generation of genomic and transcriptomic information of this ascomycete, together with a comparative genomic approach with other pathogens of this genus, will contribute to get insights int...
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| Jezik: | engleski |
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2022
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| Online pristup: | https://ainfo.inia.uy/consulta/busca?b=pc&id=62833&biblioteca=vazio&busca=62833&qFacets=62833 |
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| _version_ | 1868889972999716864 |
|---|---|
| author | MENA, E. |
| author2 | GARAYCOCHEA, S. STEWART, S. MONTESANO, M. PONCE DE LEÓN, I. |
| author2_role | author author author author |
| author_browse | GARAYCOCHEA, S. MENA, E. MONTESANO, M. PONCE DE LEÓN, I. STEWART, S. |
| author_facet | MENA, E. GARAYCOCHEA, S. STEWART, S. MONTESANO, M. PONCE DE LEÓN, I. |
| author_role | author |
| collection | AINFO |
| dc.creator.none.fl_str_mv | MENA, E. GARAYCOCHEA, S. STEWART, S. MONTESANO, M. PONCE DE LEÓN, I. |
| dc.date.none.fl_str_mv | 2022-10-21T02:02:08Z 2022-10-21T02:02:08Z 2022 2022-10-21T02:02:08Z |
| dc.identifier.none.fl_str_mv | https://ainfo.inia.uy/consulta/busca?b=pc&id=62833&biblioteca=vazio&busca=62833&qFacets=62833 |
| dc.language.none.fl_str_mv | en eng |
| dc.rights.none.fl_str_mv | info:eu-repo/semantics/openAccess Acceso abierto |
| dc.source.none.fl_str_mv | reponame:AINFO instname:Instituto Nacional de Investigación Agropecuaria instacron:Instituto Nacional de Investigación Agropecuaria |
| dc.subject.none.fl_str_mv | Diaporthe pathogens Effectors Genomes Pathogenicity factors RNAseq Secretome Soybean |
| dc.title.none.fl_str_mv | Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus. |
| dc.type.none.fl_str_mv | Article PublishedVersion info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
| description | ABSTRACT. - Background: Diaporthe caulivora is a fungal pathogen causing stem canker in soybean worldwide. The generation of genomic and transcriptomic information of this ascomycete, together with a comparative genomic approach with other pathogens of this genus, will contribute to get insights into the molecular basis of pathogenicity strategies used by D. caulivora and other Diaporthe species.Results: In the present work, the nuclear genome of D. caulivora isolate (D57) was resolved, and a comprehensive annotation based on gene expression and genomic analysis is provided. Diaporthe caulivora D57 has an estimated size of 57,86?Mb and contains 18,385 predicted protein-coding genes, from which 1501 encode predicted secreted proteins. A large array of D. caulivora genes encoding secreted pathogenicity-related proteins was identified, including carbohydrate-active enzymes (CAZymes), necrosis-inducing proteins, oxidoreductases, proteases and effector candidates. |
| eu_rights_str_mv | openAccess |
| format | article |
| id | anni_1be3f45c932ccb8104427a5d8da3cb21 |
| instacron_str | Instituto Nacional de Investigación Agropecuaria |
| institution | Instituto Nacional de Investigación Agropecuaria |
| instname_str | Instituto Nacional de Investigación Agropecuaria |
| language | eng |
| language_invalid_str_mv | en |
| network_acronym_str | anni |
| network_name_str | oai-lr-anni |
| oai_identifier_str | oai:redi.anii.org.uy:20.500.12381/2151 |
| publishDate | 2022 |
| publishDateSort | 2022 |
| reponame_str | AINFO |
| repository.mail.fl_str_mv | |
| repository.name.fl_str_mv | |
| repository_id_str | |
| rights_invalid_str_mv | Acceso abierto |
| spelling | Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus.MENA, E.GARAYCOCHEA, S.STEWART, S.MONTESANO, M.PONCE DE LEÓN, I.Diaporthe pathogensEffectorsGenomesPathogenicity factorsRNAseqSecretomeSoybeanABSTRACT. - Background: Diaporthe caulivora is a fungal pathogen causing stem canker in soybean worldwide. The generation of genomic and transcriptomic information of this ascomycete, together with a comparative genomic approach with other pathogens of this genus, will contribute to get insights into the molecular basis of pathogenicity strategies used by D. caulivora and other Diaporthe species.Results: In the present work, the nuclear genome of D. caulivora isolate (D57) was resolved, and a comprehensive annotation based on gene expression and genomic analysis is provided. Diaporthe caulivora D57 has an estimated size of 57,86?Mb and contains 18,385 predicted protein-coding genes, from which 1501 encode predicted secreted proteins. A large array of D. caulivora genes encoding secreted pathogenicity-related proteins was identified, including carbohydrate-active enzymes (CAZymes), necrosis-inducing proteins, oxidoreductases, proteases and effector candidates.2022-10-21T02:02:08Z2022-10-21T02:02:08Z20222022-10-21T02:02:08ZArticlePublishedVersioninfo:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttps://ainfo.inia.uy/consulta/busca?b=pc&id=62833&biblioteca=vazio&busca=62833&qFacets=62833reponame:AINFOinstname:Instituto Nacional de Investigación Agropecuariainstacron:Instituto Nacional de Investigación Agropecuariaenenginfo:eu-repo/semantics/openAccessAcceso abiertooai:redi.anii.org.uy:20.500.12381/21512026-02-10T17:37:09Z |
| spellingShingle | Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus. MENA, E. Diaporthe pathogens Effectors Genomes Pathogenicity factors RNAseq Secretome Soybean |
| status_str | publishedVersion |
| title | Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus. |
| title_full | Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus. |
| title_fullStr | Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus. |
| title_full_unstemmed | Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus. |
| title_short | Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus. |
| title_sort | Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus. |
| topic | Diaporthe pathogens Effectors Genomes Pathogenicity factors RNAseq Secretome Soybean |
| url | https://ainfo.inia.uy/consulta/busca?b=pc&id=62833&biblioteca=vazio&busca=62833&qFacets=62833 |